Index

_

__repr__() (utopia.objects.box_class.Box method) (utopia.objects.particulate_classes.Particulates method) (utopia.objects_generation.Box method) (utopia.objects_generation.Particulates method)

__version__ (in module utopia)

A

A1 (in module dry_deposition_MS) A2 (in module dry_deposition_MS) A3 (in module dry_deposition_MS) A_w (in module rc_sea_spray) add_compartment() (utopia.objects.box_class.Box method) (utopia.objects_generation.Box method) add_dataframe() (utopia.results_processing.pdf_reporting.PDFReport method) add_dict() (utopia.results_processing.pdf_reporting.PDFReport method) add_figure() (utopia.results_processing.pdf_reporting.PDFReport method) add_particles() (utopia.objects.compartment_classes.Compartment method) (utopia.objects_generation.Compartment method)

add_text() (utopia.results_processing.pdf_reporting.PDFReport method) addFlows_to_results_df() (utopia.results_processing.process_results.ResultsProcessor method) advective_transport() (in module RC_generator) aerosolization_flux() (in module rc_sea_spray) aerosolization_rate_constant() (in module rc_sea_spray) assign_box() (utopia.objects.compartment_classes.Compartment method) (utopia.objects_generation.Compartment method) assign_compartment() (utopia.objects.particulate_classes.Particulates method) (utopia.objects_generation.Particulates method)

B

base_path (utopia.utopia.utopiaModel attribute) Bconexions (utopia.objects.box_class.Box attribute) (utopia.objects_generation.Box attribute) Bdepth_m (utopia.objects.box_class.Box attribute) (utopia.objects_generation.Box attribute) beaching() (in module RC_generator) BF_density_kg_m3 (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesBF attribute) BF_thickness_um (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesBF attribute) biofouling() (in module RC_generator)

Blength_m (utopia.objects.box_class.Box attribute) (utopia.objects_generation.Box attribute) Bname (utopia.objects.box_class.Box attribute) (utopia.objects_generation.Box attribute) Box (class in utopia.objects.box_class) (class in utopia.objects_generation) burial() (in module RC_generator) Bvolume_m3 (utopia.objects.box_class.Box attribute) (utopia.objects_generation.Box attribute) Bwidth_m (utopia.objects.box_class.Box attribute) (utopia.objects_generation.Box attribute)

C

C (in module rc_sea_spray) calc_Bvolume_m3() (utopia.objects.box_class.Box method) (utopia.objects_generation.Box method) calc_numConc() (utopia.objects.particulate_classes.Particulates method) (utopia.objects_generation.Particulates method) calc_particleConcentration_Nm3_initial() (utopia.objects.compartment_classes.Compartment method) (utopia.objects_generation.Compartment method) calc_vol_fromBox() (utopia.objects.compartment_classes.Compartment method) (utopia.objects_generation.Compartment method) calc_volume() (utopia.objects.compartment_classes.Compartment method) (utopia.objects.particulate_classes.Particulates method) (utopia.objects_generation.Compartment method) (utopia.objects_generation.Particulates method) calc_volume_heter() (utopia.objects.particulate_classes.ParticulatesSPM method) (utopia.objects_generation.ParticulatesSPM method) calculate_rising_velocity() (in module rc_settling) calculate_settling() (in module dry_deposition_MS) calculate_settling_velocity() (in module rc_settling) Cdepth_m (utopia.objects.compartment_classes.Compartment attribute) (utopia.objects_generation.Compartment attribute) check_required_keys() (utopia.utopia.utopiaModel static method) Clength_m (utopia.objects.compartment_classes.Compartment attribute) (utopia.objects_generation.Compartment attribute) Cname (utopia.objects.compartment_classes.Compartment attribute) (utopia.objects_generation.Compartment attribute) Compartment (class in utopia.objects.compartment_classes) (class in utopia.objects_generation)

compartment_air (class in utopia.objects.compartment_classes) (class in utopia.objects_generation) compartment_deep_soil (class in utopia.objects.compartment_classes) (class in utopia.objects_generation) compartment_massBalance() (in module utopia.results_processing.mass_balance_check) compartment_sediment (class in utopia.objects.compartment_classes) (class in utopia.objects_generation) compartment_soil_surface (class in utopia.objects.compartment_classes) (class in utopia.objects_generation) compartment_surfaceSea_water (class in utopia.objects.compartment_classes) (class in utopia.objects_generation) compartment_water (class in utopia.objects.compartment_classes) (class in utopia.objects_generation) compartments (utopia.objects.box_class.Box attribute) (utopia.objects_generation.Box attribute) config (utopia.utopia.utopiaModel attribute) connexions (utopia.objects.compartment_classes.Compartment attribute) (utopia.objects_generation.Compartment attribute) create_inputsTable_UTOPIA module create_inputsTable_UTOPIA() (in module create_inputsTable_UTOPIA) create_rateConstants_table() (utopia.results_processing.process_results.ResultsProcessor method) CsurfaceArea_m2 (utopia.objects.compartment_classes.Compartment attribute) (utopia.objects_generation.Compartment attribute) Cvolume_m3 (utopia.objects.compartment_classes.Compartment attribute) (utopia.objects_generation.Compartment attribute) Cwidth_m (utopia.objects.compartment_classes.Compartment attribute) (utopia.objects_generation.Compartment attribute)

D

d_p (in module rc_sea_spray) data (utopia.utopia.utopiaModel attribute) defouling() (in module RC_generator) density_air_kg_m3 (in module utopia.globalConstants) density_seaWater_kg_m3 (in module utopia.globalConstants) density_w_21C_kg_m3 (in module utopia.globalConstants) deposition_rate() (in module rc_dry_deposition) description (utopia.objects.box_class.Box attribute) (utopia.objects_generation.Box attribute) diameter_m (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesSPM attribute)

diameter_um (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesSPM attribute) discorporation() (in module RC_generator) dispersing_comp_list (in module utopia.results_processing.emission_fractions_calculation) dragCoefficient() (in module dry_deposition_MS) dry_deposition() (in module RC_generator) dry_deposition_MS module

E

eliminationProcesses() (in module fill_interactions_df) (in module fill_interactions_dictionaries) emission_factor() (in module rc_sea_spray) emission_fractions_calculations() (in module utopia.results_processing.emission_fractions_calculation) estimate_emission_fractions() (in module utopia.results_processing.emission_fractions_calculation) (utopia.results_processing.process_results.ResultsProcessor method)

estimate_exposure_indicators() (utopia.results_processing.process_results.ResultsProcessor method) estimate_flows() (utopia.results_processing.process_results.ResultsProcessor method) Exposure_indicators_calculation() (in module utopia.results_processing.exposure_indicators_calculation) extract_results_by_compartment() (utopia.results_processing.process_results.ResultsProcessor method)

F

fill_interactions_df module fill_interactions_dictionaries module fillInteractions_fun_OOP() (in module fill_interactions_df) fillInteractions_fun_OOP_dict() (in module fill_interactions_dictionaries) flowVelocity_m_s (utopia.objects.compartment_classes.compartment_air attribute) (utopia.objects.compartment_classes.compartment_surfaceSea_water attribute) (utopia.objects.compartment_classes.compartment_water attribute) (utopia.objects_generation.compartment_air attribute) (utopia.objects_generation.compartment_surfaceSea_water attribute) (utopia.objects_generation.compartment_water attribute)

fragmentation() (in module RC_generator) full_config (in module utopia.examples_input) full_data (in module utopia.examples_input)

G

G (utopia.objects.compartment_classes.compartment_surfaceSea_water attribute) (utopia.objects.compartment_classes.compartment_water attribute) (utopia.objects_generation.compartment_surfaceSea_water attribute) (utopia.objects_generation.compartment_water attribute) g0 (in module dry_deposition_MS) g_m_s2 (in module utopia.globalConstants) generate_coding_dictionaries() (utopia.utopia.utopiaModel method) generate_flows_dict() (utopia.results_processing.process_results.ResultsProcessor method) generate_fsd_matrix() (in module utopia.helpers)

generate_objects() (in module objects_generation) (in module utopia.objects_generation) generate_particles_dataframe() (utopia.utopia.utopiaModel method) generate_particles_from_df() (in module readinputs_from_csv) generate_rate_constants module generate_rate_constants() (in module generate_rate_constants) generate_system_species_list() (in module readinputs_from_csv) get_config_data() (in module utopia.datasets) get_settling() (in module dry_deposition_MS)

H

h (in module rc_sea_spray) handle_value() (in module utopia.helpers)

header() (utopia.results_processing.pdf_reporting.PDFReport method) heteroaggregate_breackup() (in module RC_generator) heteroaggregation() (in module RC_generator)

I

I_rainfall_mm (utopia.objects.compartment_classes.compartment_air attribute) (utopia.objects_generation.compartment_air attribute) inboxProcess() (in module fill_interactions_df) inboxProcess_dict() (in module fill_interactions_dictionaries)

instantiate_compartments() (in module readinputs_from_csv) instantiateParticles_from_csv() (in module readinputs_from_csv) interactionProcess() (in module fill_interactions_df) interactionProcess_dict() (in module fill_interactions_dictionaries)

K

k_a (in module rc_sea_spray)

k_B_J_K (in module utopia.globalConstants) kineticCstdrySettlingNewtonSphere() (in module dry_deposition_MS)

L

load_csv_column() (utopia.utopia.utopiaModel static method)

load_json_file() (utopia.utopia.utopiaModel static method) load_parameters() (utopia.utopia.utopiaModel method)

M

mass_to_num() (in module utopia.helpers) massBalance() (in module utopia.results_processing.mass_balance_check) mfpAir (in module dry_deposition_MS) mixing() (in module RC_generator) model (utopia.results_processing.process_results.ResultsProcessor attribute) modify_and_save_data() (utopia.utopia.utopiaModel method) module create_inputsTable_UTOPIA dry_deposition_MS fill_interactions_df fill_interactions_dictionaries generate_rate_constants montecarlo_analysis objects_generation rc_dry_deposition RC_generator rc_sea_spray rc_settling rc_wet_deposition readinputs_from_csv utopia utopia.data utopia.datasets utopia.examples_input utopia.globalConstants utopia.helpers utopia.objects utopia.objects.box_class utopia.objects.compartment_classes utopia.objects.particulate_classes utopia.objects_generation utopia.results_processing utopia.results_processing.emission_fractions_calculation utopia.results_processing.exposure_indicators_calculation utopia.results_processing.mass_balance_check utopia.results_processing.pdf_reporting utopia.results_processing.process_results utopia.solver_steady_state utopia.utopia

montecarlo_analysis module mu_air_21C_kg_ms (in module utopia.globalConstants) mu_air_21C_mPas (in module utopia.globalConstants) mu_w_21C_kg_ms (in module utopia.globalConstants) mu_w_21C_mPas (in module utopia.globalConstants) muAir (in module dry_deposition_MS)

N

num_to_mass() (in module utopia.helpers)

O

objects_generation module

P

parentMP (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesSPM attribute) parentSPM (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.ParticulatesSPM attribute) particles (utopia.objects.compartment_classes.Compartment attribute) (utopia.objects_generation.Compartment attribute) particles_df (utopia.utopia.utopiaModel attribute) Particulates (class in utopia.objects.particulate_classes) (class in utopia.objects_generation) ParticulatesBF (class in utopia.objects.particulate_classes) (class in utopia.objects_generation) ParticulatesSPM (class in utopia.objects.particulate_classes) (class in utopia.objects_generation) Pcomposition (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesSPM attribute) Pdensity_kg_m3 (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesSPM attribute) PDFReport (class in utopia.results_processing.pdf_reporting) PdimensionX_m (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) PdimensionX_um (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects_generation.Particulates attribute) PdimensionY_m (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) PdimensionY_um (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects_generation.Particulates attribute) PdimensionZ_m (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute)

PdimensionZ_um (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects_generation.Particulates attribute) Pemiss_t_y (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects_generation.Particulates attribute) percolation() (in module RC_generator) Pform (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) plot_compartment_distribution() (utopia.results_processing.process_results.ResultsProcessor method) plot_emission_fractions() (in module utopia.results_processing.emission_fractions_calculation) plot_fractionDistribution_heatmaps() (utopia.results_processing.process_results.ResultsProcessor method) plot_rateConstants() (utopia.results_processing.process_results.ResultsProcessor method) Pname (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesSPM attribute) Pnumber_t0 (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects_generation.Particulates attribute) process_all() (utopia.results_processing.process_results.ResultsProcessor method) process_flows() (in module utopia.helpers) process_flows_comp() (in module utopia.helpers) process_results() (utopia.results_processing.process_results.ResultsProcessor method) processed_results (utopia.results_processing.process_results.ResultsProcessor attribute) processess (utopia.objects.compartment_classes.Compartment attribute) (utopia.objects.compartment_classes.compartment_air attribute) (utopia.objects.compartment_classes.compartment_deep_soil attribute) (utopia.objects.compartment_classes.compartment_sediment attribute) (utopia.objects.compartment_classes.compartment_soil_surface attribute) (utopia.objects.compartment_classes.compartment_surfaceSea_water attribute) (utopia.objects.compartment_classes.compartment_water attribute) (utopia.objects_generation.Compartment attribute) (utopia.objects_generation.compartment_air attribute) (utopia.objects_generation.compartment_deep_soil attribute) (utopia.objects_generation.compartment_sediment attribute) (utopia.objects_generation.compartment_soil_surface attribute) (utopia.objects_generation.compartment_surfaceSea_water attribute) (utopia.objects_generation.compartment_water attribute) Pshape (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesSPM attribute)

R

R (utopia.results_processing.process_results.ResultsProcessor attribute) radius_m (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesSPM attribute) rc_dry_deposition module RC_generator module rc_sea_spray module rc_settling module

rc_wet_deposition module readinputs_from_csv module Results_extended (utopia.results_processing.process_results.ResultsProcessor attribute) ResultsProcessor (class in utopia.results_processing.process_results) ReynoldsNumberFromStokes() (in module dry_deposition_MS) ReynoldsNumberFromVg() (in module dry_deposition_MS) rho_p (in module rc_sea_spray) rhoAir (in module dry_deposition_MS) rising() (in module RC_generator) run() (utopia.utopia.utopiaModel method) run_mc_analysis() (in module montecarlo_analysis) runoff_transport() (in module RC_generator)

S

save_json_file() (utopia.utopia.utopiaModel method) sea_spray_aerosol() (in module RC_generator) sed_density (in module utopia.globalConstants) sed_porosity (in module utopia.globalConstants) sediment_resuspension() (in module RC_generator) sequestration_deep_soils() (in module RC_generator) set_interactions() (in module readinputs_from_csv) settling() (in module RC_generator) settling_velocity() (in module rc_sea_spray) soil_air_resuspension() (in module RC_generator) soil_convection() (in module RC_generator)

solve_ODES_SS() (in module utopia.solver_steady_state) solver_SS() (in module utopia.solver_steady_state) species (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects.particulate_classes.ParticulatesSPM attribute) (utopia.objects_generation.ParticulatesBF attribute) (utopia.objects_generation.ParticulatesSPM attribute) SPM_mgL (utopia.objects.compartment_classes.compartment_surfaceSea_water attribute) (utopia.objects.compartment_classes.compartment_water attribute) (utopia.objects_generation.compartment_surfaceSea_water attribute) (utopia.objects_generation.compartment_water attribute) sum_column_values() (in module utopia.helpers) summarize() (utopia.utopia.utopiaModel method)

T

t_half_d (utopia.objects.particulate_classes.Particulates attribute) (utopia.objects.particulate_classes.ParticulatesBF attribute) (utopia.objects_generation.Particulates attribute) (utopia.objects_generation.ParticulatesBF attribute) T_K (utopia.objects.compartment_classes.compartment_air attribute) (utopia.objects.compartment_classes.compartment_surfaceSea_water attribute) (utopia.objects.compartment_classes.compartment_water attribute) (utopia.objects_generation.compartment_air attribute) (utopia.objects_generation.compartment_surfaceSea_water attribute) (utopia.objects_generation.compartment_water attribute)

transportProcess() (in module fill_interactions_df) (in module fill_interactions_dictionaries)

U

U10 (in module rc_sea_spray) utopia module utopia.data module utopia.datasets module utopia.examples_input module utopia.globalConstants module utopia.helpers module utopia.objects module utopia.objects.box_class module utopia.objects.compartment_classes module utopia.objects.particulate_classes module

utopia.objects_generation module utopia.results_processing module utopia.results_processing.emission_fractions_calculation module utopia.results_processing.exposure_indicators_calculation module utopia.results_processing.mass_balance_check module utopia.results_processing.pdf_reporting module utopia.results_processing.process_results module utopia.solver_steady_state module utopia.utopia module utopiaModel (class in utopia.utopia)

V

v_sed_trans (in module utopia.globalConstants)

validate_inputs() (utopia.utopia.utopiaModel method)

W

waterFlow_m3_s (utopia.objects.compartment_classes.compartment_surfaceSea_water attribute) (utopia.objects.compartment_classes.compartment_water attribute) (utopia.objects_generation.compartment_surfaceSea_water attribute) (utopia.objects_generation.compartment_water attribute)

wet_deposition() (in module RC_generator) wet_deposition_rate() (in module rc_wet_deposition) wind_speed_m_s (utopia.objects.compartment_classes.compartment_air attribute) (utopia.objects_generation.compartment_air attribute) wind_trasport() (in module RC_generator)